Biological Databases

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Naomi A. Stover, Andre R.O. Cavalcanti
Published online: May 2017
Exploring FlyBase Data Using QuickSearch
Steven J. Marygold, Giulia Antonazzo, Helen Attrill, Marta Costa, Madeline A. Crosby, Gilberto dos Santos, Joshua L. Goodman, L. Sian Gramates, Beverley B. Matthews, Alix J. Rey, Jim Thurmond
Published online: December 2016
Using Model Organism Databases (MODs)
Stacia R. Engel, Kevin A. MacPherson
Published online: November 2016
DIANA‐TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou
Published online: September 2016
Using the Tools and Resources of the RCSB Protein Data Bank
Luigi Di Costanzo, Sutapa Ghosh, Christine Zardecki, Stephen K. Burley
Published online: September 2016
TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates
Sinu Paul, John Sidney, Alessandro Sette, Bjoern Peters
Published online: August 2016
The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses
Gil Stelzer, Naomi Rosen, Inbar Plaschkes, Shahar Zimmerman, Michal Twik, Simon Fishilevich, Tsippi Iny Stein, Ron Nudel, Iris Lieder, Yaron Mazor, Sergey Kaplan, Dvir Dahary, David Warshawsky, Yaron Guan‐Golan, Asher Kohn, Noa Rappaport, Marilyn Safran, Doron Lancet
Published online: June 2016
Submitting a Sequence to GenBank
Wei‐Jen Chang, Kassandra E. Zaila, Thomas W. Coppola
Published online: May 2016
MetaboLights: An Open‐Access Database Repository for Metabolomics Data
Namrata S. Kale, Kenneth Haug, Pablo Conesa, Kalaivani Jayseelan, Pablo Moreno, Philippe Rocca‐Serra, Venkata Chandrasekhar Nainala, Rachel A. Spicer, Mark Williams, Xuefei Li, Reza M. Salek, Julian L. Griffin, Christoph Steinbeck
Published online: March 2016
DNA Motif Databases and Their Uses
Gary D. Stormo
Published online: September 2015
The Importance of Biological Databases in Biological Discovery
Andreas D. Baxevanis, Alex Bateman
Published online: June 2015
Searching and Navigating UniProt Databases
Sangya Pundir, Michele Magrane, Maria J. Martin, Claire O'Donovan, null null
Published online: June 2015
Using CATH‐Gene3D to Analyze the Sequence, Structure, and Function of Proteins
Ian Sillitoe, Tony Lewis, Christine Orengo
Published online: June 2015
Installing a Local Copy of the Reactome Web Site and Knowledgebase
Sheldon J. McKay, Joel Weiser
Published online: June 2015
Investigating Protein Structure and Evolution with SCOP2
Antonina Andreeva, Dave Howorth, Cyrus Chothia, Eugene Kulesha, Alexey G. Murzin
Published online: March 2015
Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates
Neil D. Rawlings, Alan J. Barrett, Alex Bateman
Published online: December 2014
Using the Structure‐Function Linkage Database to Characterize Functional Domains in Enzymes
Shoshana Brown, Patricia Babbitt
Published online: December 2014
Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services
Rodrigo Lopez, Andrew Cowley, Weizhong Li, Hamish McWilliam
Published online: December 2014
How to Prepare Neuroanatomical Image Data
Nathan O'Connor, Susan Tappan, Jacob Glaser
Published online: October 2014
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